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In the olden days you could move the WSUS content to a different partition using the SBS console, but you may also want to move the database itself (which can become quite large to say the least), and the instructions are still relevant today: Move WSUS Content and Database.
Use Robocopy to migrate folder and files including permissions and datestamps
There are two (lengthy) Robocopy commands to use in order to migrate a folder and its contents to a new location (for...